A comparison of Monte Carlo sampling methods for metabolic network models

Sequential Monte Carlo methods for graphical models

Inference in probabilistic graphical models (PGMs) does typically not allow for analytical solutions, confining us to various approximative methods. We propose a sequential Monte Carlo (SMC) algorithm for inference in general PGMs. Via a sequential decomposition of the PGM we find a sequence of auxiliary distributions defined on a monotonically increasing sequence of probability spaces. By targ...

Spatial stochastic network models: scaling limits and Monte-Carlo methods

Sequential Monte Carlo Methods to Train Neural Network Models

We discuss a novel strategy for training neural networks using sequential Monte Carlo algorithms and propose a new hybrid gradient descent sampling importance resampling algorithm (HySIR). In terms of computational time and accuracy, the hybrid SIR is a clear improvement over conventional sequential Monte Carlo techniques. The new algorithm may be viewed as a global optimization strategy that a...

On sequential Monte Carlo sampling methods for Bayesian filtering

In this article, we present an overview of methods for sequential simulation from posterior distributions. These methods are of particular interest in Bayesian filtering for discrete time dynamic models that are typically nonlinear and nonGaussian. A general importance sampling framework is developed that unifies many of the methods which have been proposed over the last few decades in several ...

Efficient Block Sampling Strategies for Sequential Monte Carlo Methods

Sequential Monte Carlo (SMC) methods are a powerful set of simulation-based techniques for sampling sequentially from a sequence of complex probability distributions. These methods rely on a combination of importance sampling and resampling techniques. In a Markov chain Monte Carlo (MCMC) framework, block sampling strategies often perform much better than algorithms based on one-at-a-time sampl...